rs27648509 SNP Detail

Summary

• ID
  rs27648509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148256357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCAGATG GGGAGCTCTG
  TGGAGTCCCC CATTTCCAAA TGTGTATCCT GCCTTTGCCT CCTGAGGCCA AGCCACCTGA
  TCACCTCCAT CCCAGGCCAC CTGGGACCTT TCTCTGCTTT TTGGGCCACC TCCCATCAGT
  GAATGTGGGG TCAACCTCCT CCTCTCCCCT GACTCCCCTT CTTTCCTTTT CTTCCAGGAG
  Y
  CAGGAGACAC ACATGTCTAG GGACAAGAAC ACACATTTAG TTTAGGCCTG TAATCTCAGC
  TACTGGGAAA GCCGAGACAA GAGAATAGAA AGTTCTAGGC CAGCCTGGGC TACAGAGTGA
  GTTCATCTCT AGCCTGGGCT AGAGAATGAG GGCAATTAGG CAAACTCAGT CTCAAAAATA
  AGAAATGAAA AGAGGACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805348	NES09107333	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648509					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805348	NES09107333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148256357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15298	CpG island 15298	1945 bp distal
Rr604615	regulatory region 604615	280 bp distal
Rr604616	regulatory region 604616	918 bp distal
Rr604617	regulatory region 604617	1676 bp proximal