rs27648501 SNP Detail

Summary

• ID
  rs27648501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148257474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGTGGC AGACACACTG
  TGCTGGTCAG TGGGATGCGT GGCTCCCCTC TCCTTCCACT CTGTGGGAAG CCCAGTACCC
  TATCCATCGG AGAGCACAGC TTCATTGACT TTGATCTCTG AGTCATTGGT ATTTTCCGAA
  CACAACAAAA ATGTCCCTGA AGTGCAGTGT GAAGTCCAGG ATGTGTCGCA GCTGTGTGCC
  Y
  GGTGTGCTAA GCACCGTTCA TCTCTGGTTG CAATGCACTA GGTCATTCCA TCTGGAGGCT
  CAGAGAGGGA CAGCCTGGAT CTGTGTCACA CAGCACACAG CAGGGTGCTG GACCCTGTGG
  ATGCCAGTCC CGCAGAGCAG GGGGGAATCG TGCAGAGCCC AAGGGGTTTC CTGAACCCAA
  CAGTGCTTCC TACACTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805340	NES09107291	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648501					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805340	NES09107291	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148257474 () rs orientation: forward

Symbol	Name	Function Class
Gm68601	predicted gene, 68601	915 bp upstream
Rr604615	regulatory region 604615	1397 bp distal
Rr604617	regulatory region 604617	559 bp proximal
Rr604618	regulatory region 604618	955 bp proximal