rs27644914 SNP Detail

Summary

• ID
  rs27644914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143004573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC TAAAGCCACC GAGGAAAAAA
  R
  GAATCTTAAC GGCGAAGTGT CACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37794347	NES09121491	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	G	G	G		G	G	G	G		G
ss45600486	mCV25395113	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss45713776	mCV23739289	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		G
ss147778504	ENSMUSSNP6121450	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss321403671	CHEV_4_142867906	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27644914					SNP	G	G	A	A	A	G	A	A	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794347	NES09121491	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143004573 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604183	regulatory region 604183	279 bp proximal
Rr604184	regulatory region 604184	1490 bp proximal
Tssr44444	transcription start site region 44444	1897 bp upstream
Tssr44445	transcription start site region 44445	1837 bp upstream
Tssr44446	transcription start site region 44446	895 bp downstream