rs27644893 SNP Detail

Summary

• ID
  rs27644893
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143057399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGGTTA GTAATCCAGG
  CAGGACAGCT CTCTCATGTC AGTATTGCTC CATCTGTGTC CCATTACAGG GCTTAGACCT
  TCCTGGCACG GAAGGCTGTG AAATTCTAGA CCTGAACCAG CCTGAGCAAT TTGTCTCTGA
  CGTCAGCAGT TGATCCTCCA AAGCCCTGAA ACTGGGGAGG AAGCATTTGC ATTTTCTCTC
  M
  CAGTTGGAGG TGCTGAGAGA CATGGTCTTG GGAGCAGAGA GAGGGAATGG GCGCGGTCCA
  GGGAGGGTGC CCGTGGATGC TGCTGGGGAG GTTGCTTGGC TCTCCGTACT TGCCGGTGCA
  TCTCCAGACG AGCATCATCA TCAGTGGAGC TAACTGCACA GATGATATTT ATGTTTGTGT
  TTTGCTGATG CGTTGAGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37794326	NES09119757	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27644893					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794326	NES09119757	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143057399 () rs orientation: forward

Symbol	Name	Function Class
Rr604198	regulatory region 604198	within coordinates