rs27644891 SNP Detail

Summary

• ID
  rs27644891
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143057467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTAGAC CTTCCTGGCA
  CGGAAGGCTG TGAAATTCTA GACCTGAACC AGCCTGAGCA ATTTGTCTCT GACGTCAGCA
  GTTGATCCTC CAAAGCCCTG AAACTGGGGA GGAAGCATTT GCATTTTCTC TCCCAGTTGG
  AGGTGCTGAG AGACATGGTC TTGGGAGCAG AGAGAGGGAA TGGGCGCGGT CCAGGGAGGG
  W
  GCCCGTGGAT GCTGCTGGGG AGGTTGCTTG GCTCTCCGTA CTTGCCGGTG CATCTCCAGA
  CGAGCATCAT CATCAGTGGA GCTAACTGCA CAGATGATAT TTATGTTTGT GTTTTGCTGA
  TGCGTTGAGA CCTCCTCCTC CTCCTCTTCC TTCTTGTAGA GAAACACCAC CACCAACAAC
  TTAAGGATGA TTCTGAGACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37794324	NES09119759	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T	A	T	T	A		A		A	A	A		A
ss147780117	ENSMUSSNP218135	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T											T
ss321404121	CHEV_4_142920800	CHEVERUD	SCREENING_POP	f	SNP												A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27644891					SNP	A	A	T	T	T	A	T	A	T	T	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794324	NES09119759	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143057467 () rs orientation: forward

Symbol	Name	Function Class
Rr604198	regulatory region 604198	within coordinates