rs27644886 SNP Detail

Summary

• ID
  rs27644886
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143058433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTGGTG GTAAAATCTT
  CAGACAAAGG TGACTTAGTT CCACGGTACA GTCAATCATG GTGGGAAAAT AAGGAACTTC
  AAACAGCTGG GTCATGTTGA AAGGATGACA TAAAAAACCC CATTTGTCTT TATTTAAGGA
  CCAAGCCTGA TTTTGAAAAG AAGGCTATAA GGTACCAGTC TCAGGAACAG ACCATAAAAT
  M
  CAGAATCAAG GCCATAAAAC CCCCGCTCAA AGAACAGCCT GGAGATAACC ACAAAAATGG
  GGAAATATCT TATCTCAGAA TGGTCCATCT GTGCCTGGCA GCCCTATCTC ATCTCATGGT
  TAAATATTCA TGACAAAGGA ATGCAGAACA CTGACCACCT GTGACCCCCA ACCCCCAACC
  AATGAAATTT TAGATTACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss37794319	NES09119747	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C	C	C	C	A		C
ss321404125	CHEV_4_142921766	CHEVERUD	SCREENING_POP	f	SNP											A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs27644886					SNP	A	C	C	C	A	C	C	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37794319	NES09119747	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143058433 () rs orientation: forward

Symbol	Name	Function Class
Rr604198	regulatory region 604198	864 bp distal