rs27640126 SNP Detail

Summary

• ID
  rs27640126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180428978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTTTTA TTTTGTTTTG
  TTACTGTTGT TTTTACTGTC ATTCATTTAT TTTGCTTTGT CTTTTGTTTT TCTGAGACAG
  AGTTTCTCTT TGTAGCCTTG ACTGTCCTAG AACTCAGTCT GAAGACCAGG CTGGCTTCAA
  ACTCACAGAG ATCCTCCTGT CTCTGCTTCC CAAGTGCGAC GGGTCACCAC ACCCACGTAC
  R
  GGTAAGGTTT TTAGGCAATA GTCCAGTAGT TGGGTGTCTT AGTTGTTTTG TTGTTGGGAC
  CAGATTGTAG ACTCTGAGCC TCCAGGAGCA GCAGAGACAC GTCTAGCAGG TGGTGAAGGT
  AGGGCCCTCT CTCCCTGACC TCCTTTGGAC ATAGCAGCCC TGCCTTAATG AGCTCTCAGG
  ATGCTTTAGA GGGGCCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37834445	NES08688467	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27640126					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834445	NES08688467	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180428978 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	988 bp downstream
Rr572845	regulatory region 572845	582 bp distal
Rr572846	regulatory region 572846	163 bp distal
Rr572847	regulatory region 572847	235 bp distal
Rr572848	regulatory region 572848	795 bp proximal