rs27640123 SNP Detail

Summary

• ID
  rs27640123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180429187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGGCAA TAGTCCAGTA
  GTTGGGTGTC TTAGTTGTTT TGTTGTTGGG ACCAGATTGT AGACTCTGAG CCTCCAGGAG
  CAGCAGAGAC ACGTCTAGCA GGTGGTGAAG GTAGGGCCCT CTCTCCCTGA CCTCCTTTGG
  ACATAGCAGC CCTGCCTTAA TGAGCTCTCA GGATGCTTTA GAGGGGCCTC TCAAGGTGGA
  Y
  GAGGACAAGG AAAGGCCAGG ACATGGCCCT GTGATGGCTG ATGTAGTCAG GGCGTCCCTT
  AGTTCCAAAG CCAGAGGGTC TATGCCAGTA AGGATGCGTC AGGCATAGGA AGACAGACCA
  GGAAGAGGTC AGACTCTTGT GGGCTGGATC CATAGGTCTC TCTAAATCTG TAAGGCAGGT
  GACCTCTGTA AGTTCAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37834442	NES08688471	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27640123					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834442	NES08688471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180429187 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	779 bp downstream
Rr572845	regulatory region 572845	791 bp distal
Rr572846	regulatory region 572846	372 bp distal
Rr572847	regulatory region 572847	444 bp distal
Rr572848	regulatory region 572848	586 bp proximal