rs27640122 SNP Detail

Summary

• ID
  rs27640122
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180429215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGTTGT TTTGTTGTTG
  GGACCAGATT GTAGACTCTG AGCCTCCAGG AGCAGCAGAG ACACGTCTAG CAGGTGGTGA
  AGGTAGGGCC CTCTCTCCCT GACCTCCTTT GGACATAGCA GCCCTGCCTT AATGAGCTCT
  CAGGATGCTT TAGAGGGGCC TCTCAAGGTG GATGAGGACA AGGAAAGGCC AGGACATGGC
  M
  CTGTGATGGC TGATGTAGTC AGGGCGTCCC TTAGTTCCAA AGCCAGAGGG TCTATGCCAG
  TAAGGATGCG TCAGGCATAG GAAGACAGAC CAGGAAGAGG TCAGACTCTT GTGGGCTGGA
  TCCATAGGTC TCTCTAAATC TGTAAGGCAG GTGACCTCTG TAAGTTCAAA GCCAGTCTGG
  TTTACACAGC AAGTTCCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37834441	NES08688472	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27640122					SNP	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834441	NES08688472	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180429215 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	751 bp downstream
Rr572845	regulatory region 572845	819 bp distal
Rr572846	regulatory region 572846	400 bp distal
Rr572847	regulatory region 572847	472 bp distal
Rr572848	regulatory region 572848	558 bp proximal