rs27640119 SNP Detail

Summary

• ID
  rs27640119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180429285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGTGA AGGTAGGGCC
  CTCTCTCCCT GACCTCCTTT GGACATAGCA GCCCTGCCTT AATGAGCTCT CAGGATGCTT
  TAGAGGGGCC TCTCAAGGTG GATGAGGACA AGGAAAGGCC AGGACATGGC CCTGTGATGG
  CTGATGTAGT CAGGGCGTCC CTTAGTTCCA AAGCCAGAGG GTCTATGCCA GTAAGGATGC
  R
  TCAGGCATAG GAAGACAGAC CAGGAAGAGG TCAGACTCTT GTGGGCTGGA TCCATAGGTC
  TCTCTAAATC TGTAAGGCAG GTGACCTCTG TAAGTTCAAA GCCAGTCTGG TTTACACAGC
  AAGTTCCAGG CTAGTTAGAG CTACATAGTT TGTCTCAAGA ACAAAACAAA CAGAAGCTCA
  CATGGCAGCC TTATGCATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37834438	NES08688475	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27640119					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834438	NES08688475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180429285 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	681 bp downstream
Rr572845	regulatory region 572845	889 bp distal
Rr572846	regulatory region 572846	470 bp distal
Rr572847	regulatory region 572847	542 bp distal
Rr572848	regulatory region 572848	488 bp proximal