rs27640118 SNP Detail

Summary

• ID
  rs27640118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180429347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTCTCA GGATGCTTTA
  GAGGGGCCTC TCAAGGTGGA TGAGGACAAG GAAAGGCCAG GACATGGCCC TGTGATGGCT
  GATGTAGTCA GGGCGTCCCT TAGTTCCAAA GCCAGAGGGT CTATGCCAGT AAGGATGCGT
  CAGGCATAGG AAGACAGACC AGGAAGAGGT CAGACTCTTG TGGGCTGGAT CCATAGGTCT
  Y
  TCTAAATCTG TAAGGCAGGT GACCTCTGTA AGTTCAAAGC CAGTCTGGTT TACACAGCAA
  GTTCCAGGCT AGTTAGAGCT ACATAGTTTG TCTCAAGAAC AAAACAAACA GAAGCTCACA
  TGGCAGCCTT ATGCATTACT TGATATTCTC TGAATCTGGC TCTCTATTCT CTTGTGTAGA
  CCCATCTGGC ATGGCTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37834437	NES08688476	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27640118					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834437	NES08688476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180429347 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	619 bp downstream
Rr572845	regulatory region 572845	951 bp distal
Rr572846	regulatory region 572846	532 bp distal
Rr572847	regulatory region 572847	604 bp distal
Rr572848	regulatory region 572848	426 bp proximal