rs27640117 SNP Detail

Summary

• ID
  rs27640117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180430428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGTGAC TCTTGTCAAA
  ACTCCTGGTC AACCTGCTTG GGCTTTGCTC TCTTCTCCCT CCTTTGGTGT GGGACTTGGG
  AAAAGGGGCC CAGGAAGCCT ATCAGCACCT GCTAAACAGG GTGGCAGGGT GACCTCTGGA
  AGGACAACTC CAAGCCAGGA ACTCAGTGAC CTAGTTTCCT GGTGTTTCTC AGTGGAGGAA
  R
  TCAGCCTGCA GTGCGGCAGC TATCCAGGAC CTCATTGGCA GAACTGGATT GTCGCTATCT
  GGCTGCAGAG GGAGATCAGA TGCCTGCCCA CTGGGAACAT GAAGTGTGGA GTGATGGGCA
  TGGTGTTCTC TTATCTGTGA GCTTGGGGAT ATCTGATGCC TGTCTGGATC TCCCCTTCTT
  CCCCCCCCCG CCCCCCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37834436	NES08688411	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27640117					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834436	NES08688411	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180430428 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	within coordinates
Rr572846	regulatory region 572846	1613 bp distal
Rr572847	regulatory region 572847	1685 bp distal
Rr572848	regulatory region 572848	within coordinates