rs27640115 SNP Detail

Summary

• ID
  rs27640115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180430810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCGC CCCCCCCCCG
  CCCTCCGCCC TCCGCCAATC TTCCTTTCTG TGACTTCAGA GCCTGAGCAG GAGAAGCGCT
  GACAAGGAAA GCGTGAGAGA GCACATGGCA GGGACCATAA GCCTGACAGG GGGCAGAGAG
  CCAGATCCCC TCAAGATCTG TGAAGGAGAC AAGCTGGGCT CATTACCTAT TCCATTTTGC
  R
  GGAAGAGACT GGATAGGAGG CTGCCTGCAT GGCCCTGCCC ATCAGTGCTA TCGTGCTGAT
  CCCTGGCAAT CACAGCCTGG CTGCAGCACC CAGAGCCTGA GCCGCCTGCA GCATCTGAGC
  AGATATGCAT GCCTGGAGAT GCACTGGGAA CGTAAATGTG TCTGTTAATG ATTCTCCCTG
  TGGTTCCCAC ATTGCCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss37834434	NES08688413	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs27640115					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834434	NES08688413	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180430810 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	within coordinates
Rr572846	regulatory region 572846	1995 bp distal
Rr572848	regulatory region 572848	within coordinates