rs27637367 SNP Detail

Summary

• ID
  rs27637367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169507900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT AGGTACGAAC GCTTCCATGA
  R
  CTGCAGAGAT AGTAGAAAGT CAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37821299	NES08718690	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	G	G		A	G	G		G
ss45279705	mCV23016965	ABI	CRAMUS_MOUSE	f	SNP		G	G				A		G
ss148289188	ENSMUSSNP1219337	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss320613651	CHEV_2_169491480	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27637367					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37821299	NES08718690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169507900 () rs orientation: forward

Symbol	Name	Function Class
Gm34344	predicted gene, 34344	within coordinates
Rr571229	regulatory region 571229	1278 bp distal
Rr571230	regulatory region 571230	239 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron
Tssr21905	transcription start site region 21905	1042 bp downstream