rs27637363 SNP Detail

Summary

• ID
  rs27637363
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169509424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGACTGT AAACAAAATC
  TGCGAGGCTC AGATGTGGAG CAGCCCTGCC CTGACTCAGC TATGGGGCCT TACTGACCTT
  TCTTAACCTT TGTGATTTTT TTCCCTCAAA AGAACAAACC TAAGAGAGCA AAATTATTTC
  TGTCCCGAGT TCAGACCTAC TGGAAAGGGC ACTGAGGAAG GTGGGCAGCA GGGAGGACCC
  R
  TGTTGGCTTG CACTGCCAAG CTCTAGAGAC TGAATTGTGC CCTGTGCGGT GAAATGGTAT
  CAGTGTGCCA CCCAAGTCAG AATGGTAAAA GCAGGTTAGC CAGCATTGCG TGTTTCCAGA
  GAGTGGTGTG CGCTCTCCCA GACTGCCATC ATTAGCCCTT GAACCTATGT TAGACTATAG
  GTGTCACCGT GATGCCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37821295	NES08718694	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27637363					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37821295	NES08718694	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169509424 () rs orientation: forward

Symbol	Name	Function Class
Gm34344	predicted gene, 34344	79 bp upstream
Rr571230	regulatory region 571230	565 bp distal
Tshz2	teashirt zinc finger family member 2	Intron