rs27636358 SNP Detail

Summary

• ID
  rs27636358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169345561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGTCAGC ACTAGGGCCT
  TTAGTGTCGG GATTCATATA CCCCTGACAC CAAAAGCCCC TCCTGATTGC TCTCCAAACA
  GCAGTAGCTT TTATTTCTAG AGTTGGCTAG AGATTGCTAA GCAATTGCCA TTTCAGAAAA
  CTTTTTTTTT TTTCAGGAAT GAAAATAATG TGGCCCATGA TGCTTTTCCA AGGAGCTGTT
  Y
  GGCCTCCGTC ACCAGGACAA CAGCTTGTGA ACCTACCCTC ACCTGGAGAG TTACTCTGGG
  GTCTGGGGCC ATGGATGTGA CACTTGGCTC TATTCCTGGA CACGTGACTT GTGAGTGGCA
  CTCATGACCT ACAAGTACAA ACCACCCGGA TAGAGTGAAT GAGTCTGTTT ACCCTGCTCT
  GAATCTCACA CCAGCTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37822189	NES08721282	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636358					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37822189	NES08721282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169345561 () rs orientation: forward

Symbol	Name	Function Class
Gm14249	predicted gene 14249	within coordinates
Gm74752	predicted gene, 74752	1369 bp downstream
Rr571204	regulatory region 571204	1443 bp distal
Rr571205	regulatory region 571205	111 bp distal