rs27636125 SNP Detail

Summary

• ID
  rs27636125
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169824471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAAATA AAACAGAGAA
  AGGGGAGGAC TACATTGGGA ACCGATTGAT TTTAAAAGGC AGAGGGGAGA CCACGGTGCC
  CAACAGTGAT AATGGTAACT GACAACAACC TTAATGAAGG TCAAGGTTTG ACTCCCAACT
  GAAAGAGTAG TACCTGTGGT GGAGGCTGGG AGGGACCAAT CACCAGAAGA TTCCTCCTGT
  K
  AACATGTCCA AAAGAGATGG CAGATCTTCT GCCTTTCCCA CCATGCCTTA GGACTAACCA
  CCTCCCTGAG GAAACAATAG CAAATCAGAA AATGCTCCTC CATCTTTTGC ATGTTCTAAT
  TTTCCTTCCT TCTTGATTTT TAAAGCCACA AAGCTAGGAA ATTATGCTGG GGTTTTTTTT
  CCCTTCCCAT CCTCCCTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37819274	NES08711136	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27636125					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37819274	NES08711136	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169824471 () rs orientation: forward

Symbol	Name	Function Class
Rr571284	regulatory region 571284	387 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron