rs27633976 SNP Detail

Summary

• ID
  rs27633976
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147515794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATTATTAAAG TCTCATTTTC CCCCATGAGA AAATAAATTC
  TACTGTTATT TTGTGTAAAT GTTGACCATC CCCAACAGAT TTATCATTTA TTTGGGAAAC
  M
  AGAGTCTTTT TCAGAATTTT CATGTGCAAA TTCTGAAAAC ATCAAAGCTT TTGGTTGATT
  CTTTCTGAAA CCCTCAACCC TGCCAACACC GCTTTAACAT T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37807223	NES09116412	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C		A	A	C	C	C
ss147959911	ENSMUSSNP6878512	ENSEMBL	ENSEMBL_Sanger	f	SNP					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27633976					SNP	A	C	A	C	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37807223	NES09116412	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147515794 () rs orientation: forward

Symbol	Name	Function Class
Rr398815	regulatory region 398815	1826 bp downstream
Rr398816	regulatory region 398816	920 bp downstream
Rr398817	regulatory region 398817	47 bp downstream
Rr604487	regulatory region 604487	818 bp proximal