rs27633858 SNP Detail

Summary

• ID
  rs27633858
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147604706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGTGTCTCAG ATTCTTCACT CCCTCCAGGT ATCCAATGGT
  ACCTATGGAA GGGGAAAGGA AATTGTTAAA CTCCCTAACC ACAGAAAGGT CACACAGAAA
  K
  GTCACAGTAG CTACCACTAC TGATGTTAGC TGCTGTACAT CACAGCCTCT AATACTAGCA
  ACAGTATCAA GACCAGTTCT CAAACACCTG TCCCCATTGA T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37807105	NES09114716	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	T	G	G	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633858					SNP	G	G	T	G	G	T	G	G	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37807105	NES09114716	PERLEGEN	MM_PANEL	f	SNP	G/T
ss147967051	ENSMUSSNP4572293	ENSEMBL	ENSEMBL_Sanger	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147604706 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	219 bp downstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	315 bp downstream
Rr398831	regulatory region 398831	1667 bp upstream
Rr604494	regulatory region 604494	412 bp distal
Rr604495	regulatory region 604495	within coordinates
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	1272 bp upstream