rs27633856 SNP Detail

Summary

• ID
  rs27633856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147604835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCTGTAC ATCACAGCCT CTAATACTAG CAACAGTATC
  AAGACCAGTT CTCAAACACC TGTCCCCATT GATCCTTCCT ATCCTGACTG GCTAGCATAC
  R
  GCCTGTGCTC CACTGAAATT ATATGGATAG GAAACAGGAA TCCATTCCTC ATTAAACTGA
  GCTTTCTAAA GCAGTCACAC ACCTTCTTAG GAAGTGTCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37807103	NES09114718	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27633856					SNP	A	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37807103	NES09114718	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147604835 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	90 bp downstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	444 bp downstream
Rr398831	regulatory region 398831	1538 bp upstream
Rr604494	regulatory region 604494	541 bp distal
Rr604495	regulatory region 604495	within coordinates
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	1143 bp upstream