rs27633854 SNP Detail

Summary

• ID
  rs27633854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147605279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCCCATT TCACAACTAA TTCTTGTTCA
  TTGCAAGATT ACACTTCTGT TTGTCCAGAT GTCCTGACAC AAAATTATCC ACTTTCTGCC
  CCGGCTTCTC GTGAACTGGC TTGGTATATT GACCAGACAG TTTTGGCAAA ACTTTTCAAA
  Y
  AGGCCATAGA TCTTCAGGTG TTCTACTGTG AGAGCAATGA GCTGTCTTCC AGAGTCAGTA
  GAACTGTGAT TGACTGAAAG GAATACCCCA TTCAATTATC CAAAATATTC AAAGAAATGT
  GTTTTTCTAG CAACATTAAT AACACAGCAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37807101	NES09114720	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	T	C	C	C		C	C	C	C		C
ss147967077	ENSMUSSNP4743121	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321414785	CHEV_4_146894931	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27633854					SNP	T	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37807101	NES09114720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147605279 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	within coordinates
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	888 bp downstream
Rr398831	regulatory region 398831	1094 bp upstream
Rr604494	regulatory region 604494	985 bp distal
Rr604495	regulatory region 604495	within coordinates
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	699 bp upstream