rs27633852 SNP Detail

Summary

• ID
  rs27633852
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147605601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGAATTA CAGTTGTTGC TGTACCACAG TGACTTCAGT
  TACATCCTCA GCTGCAAAGG ATGTGGATGG TGAAAAGCAT CTCCCACCTG TGTCTGAAAG
  K
  GTCCTGTGAC TATGGAAGCT ACAATGATGA TACTTTCCTC CTCCTCCTCC TCCTCCTCCT
  CCTCCTCCTC CTCCTCCTCC TCCTGCTGCT GCTGCTGCTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37807099	NES09114722	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	G	T	T	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633852					SNP	T	T	G	T	T	G	T	T	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37807099	NES09114722	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147605601 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	277 bp upstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	1210 bp downstream
Rr398831	regulatory region 398831	772 bp upstream
Rr604494	regulatory region 604494	1307 bp distal
Rr604495	regulatory region 604495	316 bp distal
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	377 bp upstream