rs27633293 SNP Detail

Summary

• ID
  rs27633293
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170186934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACATGCA TGCACGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGCACTTG CATGTGTGTG TGTGTAACTT
  GCACGCACAA TGCCGGGCAT CTCATCTCAC TAGCTCCATC CTTGGGAAAG GCACGTCTTC
  TTGGCAAGAG AGAGGAGACA CTTCCCTGAG CACCTACAAA CAAATCAGCG AATCATTAAC
  Y
  GACTCATGGT GACAACGGGC ACCTTTGTCC CTCTCCTCCC GCACGCACGT CTTTACTTGG
  TTTTTCTTTG GGGCTAGGAT TCTGGGTTGT TTCGGTGCCT GTCAGGTTTG CTTCTCACTC
  CTCACTCCAC CTGCCAGAGC TTGGTTGGGC TCTGTGGGCC GAGCTCTCAG TTTCTTGCCC
  CCTCTTTGTC CTGTGAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818124	NES08714699	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633293					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818124	NES08714699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170186934 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	1977 bp downstream
Rr571414	regulatory region 571414	1661 bp distal
Rr571415	regulatory region 571415	745 bp distal
Rr571416	regulatory region 571416	within coordinates