rs27633288 SNP Detail

Summary

• ID
  rs27633288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170187215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGTTGT TTCGGTGCCT
  GTCAGGTTTG CTTCTCACTC CTCACTCCAC CTGCCAGAGC TTGGTTGGGC TCTGTGGGCC
  GAGCTCTCAG TTTCTTGCCC CCTCTTTGTC CTGTGAACTT TCTGTGCGAT TTAGGGAGTG
  CCTTGCTGGG GCAGTTAGTG AACTCTGCAT CAGAGAAAGG ATTGCAACGG AAAACGCAAC
  Y
  TTCACAGGAA GCACAAAACT TGCTTCTTAA ACTACAGCTG GGTTTACGGT CCCAGCAATA
  AATCACTGAG TTTGTGGCTT AAATTTCCTG GCCTTCATAA AAACAAAAGC AAACCACAAT
  TTCATTAAGA GTGCCCTCTT CTTCAGCCTA GGAGAAGGGA GGGACCAGGA ATAAACACCC
  GGGAGGGGCT TTGCTGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818119	NES08714709	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633288					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818119	NES08714709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170187215 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	1696 bp downstream
Rr571414	regulatory region 571414	1942 bp distal
Rr571415	regulatory region 571415	1026 bp distal
Rr571416	regulatory region 571416	within coordinates
Rr571417	regulatory region 571417	1852 bp proximal