rs27633266 SNP Detail

Summary

• ID
  rs27633266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170189680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATTCTT CTTTACAGCC
  CACACATCCT GTTCCAAAAG TTGGCAGACG CCCAGCGTAG ATGCCTGCCC TGAGTCCTCC
  TTCCCCCAAG TGTGAAATGA AATAAACCAG TCTTCCCTTC CCCTCTTCAG GCTTAGAGGA
  TGTGGCAAGA GTGGCTACAA ATCCAGATAT TCTTTGTCTC ATAAGCACTT TTCTTCTGCA
  Y
  CTTACTGGAT ACCTGCCATT TTTTCATAAC TTAACACAAA TGCCTTTATC TACCTACTTC
  CTCCCCCACC TGGCACTCAC CAGCTCCCTT GGATCAACTG GTCAACCTGC TAAGCCATTT
  TTACACTTAA ATGCCAGGAA AGACTGGACC AGAGACGTAA ATAATACACC TCGATCTACA
  ACAATTCAGG TTGAAGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37818097	NES08714656	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27633266					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818097	NES08714656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170189680 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	mRNA-UTR
Rr571416	regulatory region 571416	1487 bp distal
Rr571417	regulatory region 571417	17 bp distal
Rr571418	regulatory region 571418	376 bp distal
Rr571419	regulatory region 571419	150 bp distal
Tssr21927	transcription start site region 21927	1533 bp upstream
Tssr27919	transcription start site region 27919	1481 bp downstream