rs27633182 SNP Detail

Summary

• ID
  rs27633182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170205988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTAGACA GACAACTCTT
  TGATTAGTGA AGTTGGATAC AAACCAGAGG TTTTGCTATT GGGTTCTCTA TTAGGTAAAT
  TATTTTAAAT AAAATTATAA TTTTTTAATT ACGCTAAAAT AAGTTAGAAG CATTTGGCTA
  TTTGGCCTTA ACAAGTTGCC CTAACCCTTA GTGGAAAGTT ATATGTTAGG TCCATTTTCA
  R
  TGCCTTGGCA CAGGCCCCTG CCTGGATGCC CTGTATAAAT CTAAAGATTT TAAATTAACC
  TTGAGGCCTT GAGTACAATA TAAAAATAAG TTTCCAGAAA GTAATTCCTG GACCTGCCTT
  CCCGGGATCG CCCCTATGGG GACACTAATA CACATACATA AGAATGGGTG TGAAGGCTGG
  AGGGTGGCCC ATTGGGTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37818012	NES08714214	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27633182					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818012	NES08714214	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170205988 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	Intron
Bcas1os2	brain enriched myelin associated protein 1, opposite strand 2	within coordinates
Rr571426	regulatory region 571426	1183 bp proximal