rs27633175 SNP Detail

Summary

• ID
  rs27633175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170207057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTTTAG AGCAAATGGA
  CATGGAGAGG GGTGGGATCA GCCTCGGCCT GCCCACTGCT TCTACAGCCT CCCTGCCAAC
  AAGGAGCCAA CAAGAGAAGG ACACCGTCTT GGGCTAATAC CTGCTAATAC GTCTTGGTTC
  CAGCTGCAAG GGCTTGGCTG CCTTTCTCTT TATCTGCACA TTGGTTAGAC TCTTGAATAT
  R
  AAAATTGGGG TGCCAGAAGA ATGGAGAGAC GGATGATGGG ACAGATAGTG GGACGGATGG
  TGGGATGGAT GGTGGGACAG ATGGTGGAGG CCTTGCTCTT CGTTAATAGA GAATTATGCA
  ATGGTTTCTT TGCAGCTCTC GCCCTGTGAC TTTAGTTTTC TTGTGCCTGT TTAAGTTCCT
  AGATATTGAA AGTCACGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37818005	NES08714132	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27633175					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818005	NES08714132	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170207057 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	Intron
Bcas1os2	brain enriched myelin associated protein 1, opposite strand 2	within coordinates
Rr571426	regulatory region 571426	114 bp proximal