rs27633173 SNP Detail

Summary

• ID
  rs27633173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170207253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGAAAAT TGGGGTGCCA
  GAAGAATGGA GAGACGGATG ATGGGACAGA TAGTGGGACG GATGGTGGGA TGGATGGTGG
  GACAGATGGT GGAGGCCTTG CTCTTCGTTA ATAGAGAATT ATGCAATGGT TTCTTTGCAG
  CTCTCGCCCT GTGACTTTAG TTTTCTTGTG CCTGTTTAAG TTCCTAGATA TTGAAAGTCA
  Y
  GGGGACCCAA AGTTGTCTGT CCACATTCTT TCCATTCCAC AGAGATTAAG AGCTTGGCAA
  ATTCACCAAG GAAGCTATGT AGCCAGACAC ATCCCCTGTA AGAATATCAG GCAGCATGGC
  TGTGTTCCAA TGACCTAGGT CATTCATATC TCATATGTCA CTTTAGGAAT TCTTTGTGTC
  AGTCCACGGC TTTGGCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37818003	NES08714114	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27633173					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818003	NES08714114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170207253 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	Intron
Bcas1os2	brain enriched myelin associated protein 1, opposite strand 2	within coordinates
Rr571426	regulatory region 571426	within coordinates