rs27632879 SNP Detail

Summary

• ID
  rs27632879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144632399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACT CACACACACA GGGATGTGGT
  R
  TCACTTCAAG GCTCTCTGCC CTCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37800019	NES09123425	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	G	G	G	G		G	G	G	G		G
ss147840358	ENSMUSSNP5534445	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss321410730	CHEV_4_144495732	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27632879					SNP	G	A	A	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37800019	NES09123425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144632399 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dhrs3	dehydrogenase/reductase 3			Intron
				Noncoding-Transcript-Variant
Rr604254	regulatory region 604254			1107 bp distal
Rr604255	regulatory region 604255			285 bp distal
Rr604256	regulatory region 604256			1 bp proximal
Rr604257	regulatory region 604257			1567 bp proximal
Tssr40174	transcription start site region 40174			1516 bp downstream
Tssr40175	transcription start site region 40175			1156 bp upstream
Tssr44469	transcription start site region 44469			1852 bp upstream