rs27631056 SNP Detail

Summary

• ID
  rs27631056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148268746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGCCTT GTAGAGGCTG
  GTATTCACTA AGCGCTCAAT AAGTGCACGG TTAGCTAAAC AGAGGGGTGT GGGTGGTGCT
  CCCACTGTAG GAGGAGGATG GTGCTCCTGA ATACAGTTGC CTATAGAGGT CATGCTGCTC
  AGAAGTGAGA TATGAGCCAC ACCACACATA GGAAGAAGAC AAAGGCTATT TCATGGGTGC
  Y
  CAGACAGTAG GTGGCAGAGT GTGTGTCATG AAATCCCAAG GCAGGAAGTT GCTGAAGAGG
  CAGGGTGGGC AGGGTGGTGT AATGGGGGGG CCCACTCCTG GTTCTGGAGC GCCGTTATGC
  CAGCCTAGCC TGCCCTCCTG AGAGTGCCCA GTGTCACAGC TTACCTTTGA TGAAGTCCTC
  CCACCTGGCT ACAGTTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805295	NES09107027	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27631056					SNP	C	T	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805295	NES09107027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148268746 () rs orientation: forward

Symbol	Name	Function Class
Gm68601	predicted gene, 68601	within coordinates
Rr604623	regulatory region 604623	1257 bp distal
Rr604624	regulatory region 604624	82 bp proximal
Rr604625	regulatory region 604625	1722 bp proximal