rs27630696 SNP Detail

Summary

• ID
  rs27630696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148454246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT CACGTGCCGT GCAAACCTAG
  Y
  ATTGACTGGA TGCTGCGTGA GCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss37804224	NES09119905	PERLEGEN	MM_PANEL2	f	SNP		C		C		T
ss148004258	ENSMUSSNP6585880	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss321419753	CHEV_4_147743898	CHEVERUD	SCREENING_POP	f	SNP					T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs27630696					SNP	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804224	NES09119905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148454246 () rs orientation: forward

Symbol	Name	Function Class
Gm13200	predicted gene 13200	within coordinates
Rr604663	regulatory region 604663	1564 bp proximal