rs27630690 SNP Detail

Summary

• ID
  rs27630690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148457656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTCCCTC TGCACCTCGG
  AGAGCAGGGA TTCCTGGAGC CTGCCCCTTT GCTTTCCGTT TCCTCCAAGG GTTCCTGGGC
  TCCTTCTGAA GATCACACTT CAGGTCCAGA GTGGTACCCG GCTGATACAA TTCTAGTTAA
  ATGAGAGACC AGGCTGAAAT GAAAACTACG AACTCCTTAG ATTTTTGCAG GCTGTGGTCT
  R
  CTTCCAATGC CACTCGATGC CTGGTGCTGC CCGAGGCCTC CCACCCCATA CGGTTACAGG
  AGCACTTGAG ATGAGCCTGG TTCAGGTTGG CATATGCTTT GGTGGTAAAA ACAAGACAAA
  AACCTGAATG CAAAACTGCT GCATTGATCG TTTTTCACTC CAGTCACACA CTGAAACCTC
  ACCATCTCCC ATCCATCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804218	NES09119741	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27630690					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804218	NES09119741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148457656 () rs orientation: forward

Symbol	Name	Function Class
Gm13200	predicted gene 13200	within coordinates
Gm69489	predicted gene, 69489	1773 bp upstream
Rr604663	regulatory region 604663	1118 bp distal
Tssr40271	transcription start site region 40271	1811 bp upstream