rs27630689 SNP Detail

Summary

• ID
  rs27630689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148458004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTTTTTCA CTCCAGTCAC
  ACACTGAAAC CTCACCATCT CCCATCCATC AGATTAAATA TATTGCTGAA ATTAATTTTA
  CCTGGTTTGG GTTTTTTTCC CCCTTCTCTC TTTTAAATGC AGCAGCTGCT AGAACATCCT
  TAATTGGCTA TGCAGCTTAC ATTTCACAGC TATTCACAGC GCTGGCCCAG AGGGAAGGAG
  R
  ATTGTAATGG CCCGTGGAGC CTCCTACCAT GACGCTTAAG AGGTAGGATG GACAGCGCTC
  ATGTTTAATT GGGGAGAGAA GTCCAGGAAG CCAGTGTCTC AACAAGGCCC ATATCTGTGA
  AGTCTGAGGC ATTGTGTAAG GGTAACAGAA AAGGGGGGGT TACACAAGCT GCTTCATGCC
  AACCTAACCC TTTTACATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804217	NES09119729	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G	G
ss45706513	mCV24939623	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss148004378	ENSMUSSNP610269	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27630689					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804217	NES09119729	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148458004 () rs orientation: forward

Symbol	Name	Function Class
Gm13200	predicted gene 13200	within coordinates
Gm69489	predicted gene, 69489	1425 bp upstream
Rr604663	regulatory region 604663	1466 bp distal
Tssr40271	transcription start site region 40271	1463 bp upstream