rs27630686 SNP Detail

Summary

• ID
  rs27630686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148458359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC CCCAGAACAG CGAGTGCCAG
  R
  CACTGGGATT GCCCATTGGG ACCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss37804214	NES09119732	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		A		A	G		G		G
ss45654573	mCV24939625	ABI	CRAMUS_MOUSE	f	SNP		G	G				A		G
ss148004391	ENSMUSSNP1883149	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss321419784	CHEV_4_147748011	CHEVERUD	SCREENING_POP	f	SNP												G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs27630686					SNP	G	G	G	G	G	G	A	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804214	NES09119732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148458359 () rs orientation: forward

Symbol	Name	Function Class
Gm13200	predicted gene 13200	within coordinates
Gm69489	predicted gene, 69489	1070 bp upstream
Rr604663	regulatory region 604663	1821 bp distal
Tssr40271	transcription start site region 40271	1108 bp upstream