rs27630652 SNP Detail

Summary

• ID
  rs27630652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148466424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTGAGT CATATGCGGT
  TGCTAGAAAT TGAACTCGGG GCCTCTGGAA GAGCAGCCAG TGCTCTTAAC CTCTGAGCCA
  TCTCTCCAGC CTGCGTTATT ATCTTTTTTT TTTTAATAAA GGAAAGTGGG AGGGAGGTGT
  GTCAGGTGAG AGCGAGTGGA GTGAGATGAG GACGGGAAGC AAACACAATG CAGTATGAAA
  Y
  TGTCAAGAGA TAGATTTGAC TTTTAAAGAC TATGCCCTTG GTTTGATTTT TTTAACACAA
  GGTTGCCCAC TAGCGCAATA GTGGCATGGC TGTTACGGTG TAACCAACCA CTTTTTGCTT
  GGATCTGAGG CCTGTCTTGT AGACTCCCAT TCTCCTCCCT CAGCCCCAGC ACTGAGATCA
  CAGACCTGTG CCACCACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37804180	NES09119439	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27630652					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804180	NES09119439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148466424 () rs orientation: forward

Symbol	Name	Function Class
Rr604668	regulatory region 604668	1187 bp distal
Rr604669	regulatory region 604669	1931 bp proximal