rs27630623 SNP Detail

Summary

• ID
  rs27630623
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148471356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTTTTAC AGGTCTCAAG GGGGTCCAGT TTCACATTAG
  GAGCCTGCAG CCAGGGTTGG GTGGGGAGAG GGATTCAGGG AAGGAATGGG AACCTTAGGA
  W
  GTGAGGGAAG TGAGGGGTGC ACATGTAATT GAGGTGTACC CACCATGCAG ATGCGGGTAT
  GCTTCACCAC TGATGGCCTT TTGATGTCAG ATATCCCAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37804151	NES09119313	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A	T		T	T	T	T		T
ss148004986	ENSMUSSNP4606326	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
ss321419897	CHEV_4_147761008	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27630623					SNP	T	T	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37804151	NES09119313	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148471356 () rs orientation: forward

Symbol	Name	Function Class
Rr604669	regulatory region 604669	1476 bp distal