rs27630454 SNP Detail

Summary

• ID
  rs27630454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144129460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC TGTAAACCTG GAGCAAAACC
  R
  CAAAACCGGA AAGTGTTAAG TGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37801289	NES09112186	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A	A	A	A		A	A	A		A
ss147823021	ENSMUSSNP4371329	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss321408451	CHEV_4_143992793	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27630454					SNP	A	G	G	G	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37801289	NES09112186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144129460 () rs orientation: forward

Symbol	Name	Function Class
Pramel13	PRAME like 13	Intron
Pramel13os	PRAME like 13, opposite strand	854 bp upstream
Rr604225	regulatory region 604225	1488 bp proximal
Rr604226	regulatory region 604226	1989 bp proximal
Tssr40137	transcription start site region 40137	855 bp upstream
Tssr44454	transcription start site region 44454	731 bp downstream