rs27630453 SNP Detail

Summary

• ID
  rs27630453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144129521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTT GGGAGGCAGG AAAGATAAAG
  Y
  TGAAGCCACA GCCATCATTT GAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37801288	NES09112187	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T		T	T	T	T		T	T	T		T
ss45690716	mCV24102616	ABI	CRAMUS_MOUSE	f	SNP		C				C		T
ss147823027	ENSMUSSNP2319788	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss321408452	CHEV_4_143992854	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27630453					SNP	T	C	C	C	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37801288	NES09112187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144129521 () rs orientation: forward

Symbol	Name	Function Class
Pramel13	PRAME like 13	Intron
Pramel13os	PRAME like 13, opposite strand	793 bp upstream
Rr604225	regulatory region 604225	1427 bp proximal
Rr604226	regulatory region 604226	1928 bp proximal
Tssr40137	transcription start site region 40137	794 bp upstream
Tssr44454	transcription start site region 44454	670 bp downstream