rs27629672 SNP Detail

Summary

• ID
  rs27629672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172195572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCTTGA CATTCGCAGC
  ACTTGCTGTG GGGAAAGCAG GCCAAGAACT TGTCATGTGC CCCATCCACT TCGAGGCTGG
  ATGGGATGGG GCTCCAAGTC TGAGATTTCA TTGATACTAG GCAATATGGT TTGTAAAATA
  CAGAAACACT GCCCAATTGT GATGTTGTCA ATGGGCTCCT GATGCCCATA TTCTGGGGAA
  Y
  CTTAGATACT GCCATAGAAG CTAAAAGCAC CCTAGCTTTC TTAGACAATC CACTTAGCTA
  TCTGAAACTT GAGGCATTCC AGACCTGACA TGTTTACAAT GCACCACTGA ACTTTTTTAA
  ATTGAATTAA TCAGATGTAT ATTTGTACCA CTTTGGGGGG TGGGGGGAGG TTGAGAGGAA
  AATATTGCTC GTTCTAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ
ss37809100	NES08702616	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ
rs27629672					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809100	NES08702616	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172195572 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam210b	family with sequence similarity 210, member B			Intron
				mRNA-UTR
Rr571655	regulatory region 571655			within coordinates
Rr571656	regulatory region 571656			1665 bp proximal
Rr571657	regulatory region 571657			1956 bp proximal
Tssr21947	transcription start site region 21947			356 bp downstream