rs27629670 SNP Detail

Summary

• ID
  rs27629670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172197819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGTGAA TGGCTTACAG
  TCTGAAACAA ATAAAAGCCT TTGTAAAAGT CTGCGGTCTG CCGTCTGGTA AGCCATCACT
  GCCGCCAGGA AGAGCGCCAT GGGAATGTGG CACTCCTCTG CATGTAGGAT AGTCACAAAC
  TAGCCGGAGC TAGAGGAGGC AGTGTCCCGT GCTCAGTTTG CCTCCCTGGA TTGCATCTCA
  Y
  TTAACTGCAG CTTGGGTGGA CAGTACTAGC AATATTGCTA CTTCAACAAA GCCTTAGCAC
  AGGACGGATG ACTAGAGGCC TCTTGTCCCA AGAGGATAGA CTTCCACTCA GGCATGTTCT
  CAAGTTCCTG ATGGTGGTCC AGTTGGCCAT GAAAGCCTGT TTCTCTAATT CCAAGTTCCC
  CCTCTGGTTG ATGGACAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ
ss37809098	NES08702598	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ
rs27629670					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37809098	NES08702598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172197819 () rs orientation: forward

Symbol	Name	Function Class
Aurka	aurora kinase A	291 bp downstream
Fam210b	family with sequence similarity 210, member B	150 bp downstream
Rr571656	regulatory region 571656	480 bp distal
Rr571657	regulatory region 571657	within coordinates