rs27629459 SNP Detail

Summary

• ID
  rs27629459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171482684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCGGTA GGCACAGCCT
  TTCCATAATT ATCTGCTGAT CCTTTCACTC AATCCCCAGC TTCCCTCCTT GCTGCAAAAG
  CCTCCGACTT TAATGTATCC TCTCCTGCCC TGCCAGACAG TCAGCCCCAT TCACTACATC
  AGCTTTGAAC TTGTCAGCTG AAACAAGGTG ACAGGGGCTG ATGTTACAGA GCTCGATACA
  R
  TAAAAGTCAA GCAGCTATTC GTGTTCCACG GCTGGGGCGT CTCCGTCATA AAATATTCAT
  CCTGTTATGT CACTCTTTAT TTGGCCGCCA GAACCAAAAG AGCCGGAGAA CCTTCAGGAT
  GTCGGTGTGC AGCAGTACCT CGTGCATATA ACCAAGGTCC CCAAATTAAT TTGGAGTGCT
  TAGAGCAGCC TCTTCTATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37812195	NES08717334	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27629459					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37812195	NES08717334	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171482684 () rs orientation: forward

Symbol	Name	Function Class
Gm35481	predicted gene, 35481	303 bp upstream
Gm74866	predicted gene, 74866	within coordinates
Rr571565	regulatory region 571565	839 bp proximal
Tssr21938	transcription start site region 21938	71 bp upstream