rs27629455 SNP Detail

Summary

• ID
  rs27629455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171483122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACGCAGTG TGAGAGCGAA
  GTATCTTCCC TTGCACAGTA CTCTTGGGAC TCCGCCCGTG TGCTCGCCAA AGTCCAAGTG
  TAACTCCTAA GTAGTTCCGA GCATCAGGGG CAGCAGCTTC CTGTCGTCTG CAGCAACCGA
  GCAAACTTCC GCATGGCCGA GTAGTCATCT GAAGACCGTA AGGAAGGTGT ACGTGACTCG
  Y
  TGCCCATACA GAACGTACAT CCTTAGAAAC AACAGATACA TTTTCCCGAT TGCCCCAGTG
  TCACCCTGTG TGGACAGAAT GTTATGTTTT TCCAGAATAA TTTAAATTGA TAGGCGTGAC
  CTTCCGACGA CTTCCCCTGT TTCCTCATAA ATCCATTCTG TTTGCTAACG GCGCTCCATC
  ACGAGACACT CTGTGCGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37812191	NES08717338	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27629455					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37812191	NES08717338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171483122 () rs orientation: forward

Symbol	Name	Function Class
Gm35481	predicted gene, 35481	741 bp upstream
Gm74866	predicted gene, 74866	within coordinates
Rr571565	regulatory region 571565	401 bp proximal
Tssr21938	transcription start site region 21938	331 bp downstream