rs27629454 SNP Detail

Summary

• ID
  rs27629454
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171483220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCATCAGG GGCAGCAGCT
  TCCTGTCGTC TGCAGCAACC GAGCAAACTT CCGCATGGCC GAGTAGTCAT CTGAAGACCG
  TAAGGAAGGT GTACGTGACT CGTTGCCCAT ACAGAACGTA CATCCTTAGA AACAACAGAT
  ACATTTTCCC GATTGCCCCA GTGTCACCCT GTGTGGACAG AATGTTATGT TTTTCCAGAA
  K
  AATTTAAATT GATAGGCGTG ACCTTCCGAC GACTTCCCCT GTTTCCTCAT AAATCCATTC
  TGTTTGCTAA CGGCGCTCCA TCACGAGACA CTCTGTGCGT TTCTAACATG AAACCCCACA
  AATCTGGTGT GGGTTTATAA TTCTGGGAGT CTGTTAAAAA TAAAATAGTG CCAGGAAAAC
  TTATTGGGGT GCCTTTGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
ss37812190	NES08717339	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
rs27629454					SNP	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37812190	NES08717339	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171483220 () rs orientation: forward

Symbol	Name	Function Class
Gm35481	predicted gene, 35481	839 bp upstream
Gm74866	predicted gene, 74866	within coordinates
Rr571565	regulatory region 571565	303 bp proximal
Tssr21938	transcription start site region 21938	429 bp downstream