rs27629449 SNP Detail

Summary

• ID
  rs27629449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171483794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGTGAA TGGTTTCTCA
  CGTCTTATGG GATTCAGGCT ATCAAATGAA TATCTCTATG TTCATTTCTC TCCATTTTTC
  TGGCTGGTAT GTGATATCGA GCCACAACAG CAAGAATTTG ACAAGAAGGC AAAATTTAAA
  AGCCAGACAA AAAAGGCTCT GTCCTTCCTG GCATGTCAGC TCATTTGTGC AGATCTGTCT
  R
  CCACTGGCAT CAGCCCTTGT CTTTGGGTTT ACAGCTTTGT TCACACTTCC TAAAATAAAG
  CTAATATGCT CAGTATACAG CATATTAAAT TCTGTAAATA GCGTCTGTTC AGCAGTGACA
  CCCAGTAAAG CTCCTGTAAC GAGAGCTGCC AGCAGAGACG CTGCCTACTC TCTTTATTCT
  TATACCCAGG GTTTTGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss37812185	NES08717344	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs27629449					SNP	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37812185	NES08717344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171483794 () rs orientation: forward

Symbol	Name	Function Class
Gm35481	predicted gene, 35481	1413 bp upstream
Gm74866	predicted gene, 74866	within coordinates
Rr571565	regulatory region 571565	within coordinates
Tssr21938	transcription start site region 21938	1003 bp downstream