rs27629446 SNP Detail

Summary

• ID
  rs27629446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171484035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACTTCC TAAAATAAAG
  CTAATATGCT CAGTATACAG CATATTAAAT TCTGTAAATA GCGTCTGTTC AGCAGTGACA
  CCCAGTAAAG CTCCTGTAAC GAGAGCTGCC AGCAGAGACG CTGCCTACTC TCTTTATTCT
  TATACCCAGG GTTTTGAACA TCATGGCAAT CCCCAAAACA ACTCTGCATA AAGAAGGGTA
  R
  CTATCCACAT GTCACCATCT TGTCTCTGAA GCCATCCCAG CCTGCTCAGA AAGCCCCTTA
  GCTATGTGAC TAATCACTGA TTGTAGAGAG AAATGTCATT GCTCTCTAGC TGATATTCAT
  ATCCACATTC TGGCTGAAGC CCTTCCATAG CGGCCATGTG CCACACACTA ACACATGGGA
  AGAACATGGT TGTTGTCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37812182	NES08717347	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27629446					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37812182	NES08717347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171484035 () rs orientation: forward

Symbol	Name	Function Class
Gm35481	predicted gene, 35481	1654 bp upstream
Gm74866	predicted gene, 74866	within coordinates
Rr571565	regulatory region 571565	within coordinates
Tssr21938	transcription start site region 21938	1244 bp downstream