rs27629439 SNP Detail

Summary

• ID
  rs27629439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:171485025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCCTCCA TTAAGGCTAC ACCTCCTAAT AGTGCCACTC
  CCTATAGCCA AGCATTCAAA GACATGAGTC TGTGGTGGTC ATTCTTATTC AAACCACCAC
  Y
  GTGATGGACA TGACCATCAT TCCTCTCACT AGACTGTGGC TCTAATCACC CTTCCCCTCT
  TTCAAAGGTC TAAGTGAAGA AGCGAACCAG AGAGGTAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37812175	NES08717183	PERLEGEN	MM_PANEL2	f	SNP	T			C	T	C		T	C		C
ss45328048	mCV23769292	ABI	CRAMUS_MOUSE	f	SNP	T	T	C		T
ss148306597	ENSMUSSNP692882	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss320617075	CHEV_2_171468605	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27629439					SNP	T	T	C	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37812175	NES08717183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:171485025 () rs orientation: forward

Symbol	Name	Function Class
Gm74866	predicted gene, 74866	within coordinates
Rr571565	regulatory region 571565	917 bp distal