rs27628235 SNP Detail

Summary

• ID
  rs27628235
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141445636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTGCAA TCCCAGTACT
  TGGGGAGCAG AGGCAGGAGG ATTAGTGGCT CAAGGCTAGC TTGGGCTATC TAAAACAAAC
  CCTGCCATCT TCCAACTTAG ATCAATGACT TCATGTCTCT ATCAGCCAAA CAAAAGGCAA
  GCTGGTGATG GCTCTGGCAC AACTCTTACA ACTTCTGTTA CCCCCTCAAA AGCGAGTATG
  K
  AAGACCTGAG CCCTGCTATT CAGAACAGCT TACTAGATAA ATCGATTATG CAGGTGTAAA
  TCTGCAGAAG TGGTACCAGA GGAACAAGCT GGAGACACAA TTTCAACCTC AGTCAACATC
  TAGCGACAGA CTAATTAATA TCATTAATAC AACTCCACCC TTAAGCATGA CATCAAATGT
  CTTCTAGTAT CGCAGAGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37785218	NES09120047	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		G	G	G	G	G	G	G	T
ss45624097	mCV24076839	ABI	CRAMUS_MOUSE	f	SNP	T							G		G
ss147742638	ENSMUSSNP2776937	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27628235					SNP	T	T	G	G	G	T	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785218	NES09120047	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141445636 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	962 bp upstream
Rr603862	regulatory region 603862	1769 bp proximal