rs27628233 SNP Detail

Summary

• ID
  rs27628233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141446531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTAGATC TTCCAGCTCC
  ACCTCAGCCT GCCTCTCAAG TGCTGGGATT AACAATGCGA GTCACCATGC TCAGCACCCC
  AACAAAAACC TGAGACAGGT TCTTACCGCG CAGGCTCAGC TGTCCTGAGA CCTGAAATGG
  AGTCCAGGCT GGCCTTGAAC TCTCAGTCTC AAATATCAAA CAAAAACAAT CAAAACCAAA
  Y
  TAACACTCAA TGTGCAAGTT ATCCCTGGGT TATGAGGAAT AAGTGAGCTG TGGCAGTCTT
  TATCCTTCTC TGTGTTACAA CCTTTCTAGC ATAGCTATTC AGCATTTACC AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAACCAAAAA AACAAAAAAC
  AGGAAAGAAA AATACATAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37785216	NES09119983	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27628233					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785216	NES09119983	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141446531 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	67 bp upstream
Rr603862	regulatory region 603862	874 bp proximal
Rr603863	regulatory region 603863	1502 bp proximal