rs27628229 SNP Detail

Summary

• ID
  rs27628229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141457986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACATTCCC ACACACATGT
  GTGAAATTGA TAATAAAGAG TAATAACCTC CATTTCTATT TCTTCCCTTA GCTGGAGCAC
  ACGCGCTCTG CCCACACCTG CCAGAGTGCT GTTCTCCAAA ACCCCTGGGT TTCTTCACGG
  TCCCTGCCAA CAAAGTTCCC ACCTCCTCCT CACTTCTTGC CTGTTCTCTG CTTGAAACAG
  Y
  CAACCAGCTA AAGGTATCTC CTCCGATCTT ATTTTGGTTT TGGTTTTAAA GGTAGACGTG
  TGTGTGTGTG TGTGTGCGCG TGTGCGTGTG CGTGTGCGTG TGCGTGTGTG TGTGTGTGCT
  TTGTTATACA TCAGTGGGTG TGCTCAGTGC AAGCGGTGCA TGGGGAGGCA AGAGGGCGAC
  TTGGGGGCTC AGTTTCGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37785212	NES09119682	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27628229					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785212	NES09119682	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141457986 () rs orientation: forward

Symbol	Name	Function Class
Gm34863	predicted gene, 34863	within coordinates
Rr603867	regulatory region 603867	1124 bp distal
Rr603868	regulatory region 603868	858 bp distal
Rr603869	regulatory region 603869	1077 bp proximal