rs27628220 SNP Detail

Summary

• ID
  rs27628220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141461371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTGCTG GGATTTGAAC
  TCTGGACCTT CAGAAGAGCA GTCGGGTGCT CTTACCCACT GAGCCATCTC ACCAGCCCAA
  GAAACAACTT TAAAGATACA AAGTTGTTAC AAAGTCTCCT GAGTGGGCAC GATCAATATT
  TTGGGTACAA TAAAAGGATT TTAGCCACTT GGGATAAGTT AACATTATGT TTTGAGAAAG
  Y
  CTCCTGTGGT CTCTGCTAGC TTCCAAGTCA GGGTAACGCT CAGGAGGGCC TTGAACTTGG
  CATCTTATTG GCAGTCCTAT ATGCTCAGAT CACAAGCCTA CCCTCTTTGG TATAGGAACT
  GGACTCACAA CTAATCGCGC TGCATCCTCA AACTATACTT TTTTTTTTTA AACAAGATTT
  ATTTTGTGTG TATGGATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37785202	NES09119544	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T	T	C	C	C		C	C	C		T
ss321389366	CHEV_4_141289975	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27628220					SNP	C	C	T	T	C	T	T	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37785202	NES09119544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141461371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	856 bp proximal
Gm34863	predicted gene, 34863	within coordinates
Rr603869	regulatory region 603869	1588 bp distal
Rr603870	regulatory region 603870	592 bp proximal
Rr603871	regulatory region 603871	1093 bp proximal